In the low range, the guitar is effectively a 'bass reflex cabinet'. The two lowest frequency box resonances, the 'Helmholtz' air mode, and the 'main top' mode, work together to form the spectrum in that region.
The 'Helmholtz' mode is what you hear when you blow across the mouth of a soda bottle. The pressure changes everywhere inside the bottle, which 'breaths' through the neck. By itself, with a 'rigid' box, the 'Helmholtz' resonance would probably come in at around 125 Hz; say about B on the A string. The 'main top' resonance is where the lower bout area (mostly) is vibrating like a loudspeaker cone. On a guitar with no back this would happen at around 185 Hz; something like F or F# on the D string.
However, on real guitars these things are not independant. The pressure changes of the 'Helmholtz' air mode push on the top, and the top pushes air in and out of the soundhole. The effect of this is that the two resonances shove each other aside a bit in pitch. The 'main air' mode is usually dropped to around G on the low E string, but can range anywhere from F to A#. The 'main top' mode on most guitars is bumped up to around the open G string pitch, but can vary a lot too.
The 'main air' mode is the lowest resonance on the instrument that can actually produce much sound. There's nothing else on the instrument that can effectively move much air at that low a pitch. Often, for example, there is a 'neck' resonance down around 70-80 Hz, but the only thing that's moving much is the headstock, and that's just too small to radiate sound at that pitch unless you get right on top of it.
If the 'main air' part of the 'bass reflex couple' is up around A, it's not really very effective at the low E note: there's not much fundamental. You start to notice it more as you get closer to the pitch of the resonance.
It's fairly easy to hear the 'main air' mode: it's the pitch you tend to associate with the 'tap tone' at the bridge on an assembled box. You can alter it by changing the soundhole size, or by changing the stiffness of the top or the back. A smaller soundhole gives a lower pitch, but a weaker, 'main air' resonance. Making the top or the back more flexible, by shaving braces, increases the strength of the 'bass reflex couple', which causes the pitches of the 'air' and 'top' resonances to push each other further apart.
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